Single Cell Analysis Portal (SCAP)

The Single Cell Analysis Portal (SCAP) is an Rshiny dashboard to visualize and annotate single-cell data in anndata format interactively. The app has been developed mainly with cloud usage inside the GenAP platform in mind, but can also be used locally via R or using the Docker containers we provide on Dockerhub.

Simply use the following commands to pull and run the container locally:

Dev container

docker pull singlecellacademy/scap:dev
docker run -it -p 3838:3838 -v my_folder_with_h5ad_files:/ftp singlecellacademy/scap:dev